Protein Info for MPMX26_01047 in Acinetobacter radioresistens SK82

Annotation: High frequency lysogenization protein HflD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF04356: DUF489" amino acids 17 to 229 (213 residues), 123.7 bits, see alignment E=5.1e-40

Best Hits

Swiss-Prot: 86% identical to HFLD_ACIAD: High frequency lysogenization protein HflD homolog (hflD) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K07153, high frequency lysogenization protein (inferred from 86% identity to aci:ACIAD1220)

Predicted SEED Role

"FIG002903: a protein of unknown function perhaps involved in purine metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>MPMX26_01047 High frequency lysogenization protein HflD (Acinetobacter radioresistens SK82)
MVDFPFQQPQTLSERQNRALALAAVFQATQLTHMTAMSGQKSMGESGNFYFEQLIKASLN
IRPTVNHSSQTLDFFNHLADISLGLKTLESSIIQPFSSTPKSRIPKISAAKLPMSYAMAL
LQLEKKVYRNPEYVQIIEKSQQKILKQLSFFDNNYLHPSILANLAQTYVDTAGQINPRIL
VRGNAEAFKDTQHTNRIRASLFTGLQMAHLWRQLGGSSWNMIFRKRKLLQDIQDLARLQY
QAV