Protein Info for MPMX26_00939 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 245 to 269 (25 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 137 to 306 (170 residues), 87.8 bits, see alignment E=3.8e-29

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 81% identity to acd:AOLE_12360)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>MPMX26_00939 hypothetical protein (Acinetobacter radioresistens SK82)
MSYVAHELSSRNKLLFGLGSFLIPVLIWCAVSYLPWIWHPQVQITDSGSVAYLQVDSRID
KNTFFSAAQSAIDQGLAPPQGILVNPIYLPAPHEVATALVTAFTTAPAQANVPWFHESLW
HSIKLVFTAFFISSLIGIPLGILCGFSNKLSQLTEPFIEFFRYLPAPAFGALAVAILGIN
DAPKIAIIVIGTLFQQILIIANTTRLVDRSLIEAGFTLGTNKIKSLFHVVIPAAMPEIYR
NLRVLLGWAWTYLIVAELIGSTSGITWFITQQARYQNFDNVFAAILIIGVIGLLCDVILM
KLGQRLFKWKPGAN