Protein Info for MPMX26_00938 in Acinetobacter radioresistens SK82

Annotation: Aliphatic sulfonates import ATP-binding protein SsuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 PF00005: ABC_tran" amino acids 41 to 180 (140 residues), 114.2 bits, see alignment E=1.1e-36

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 84% identity to abb:ABBFA_002244)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, ATPase protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>MPMX26_00938 Aliphatic sulfonates import ATP-binding protein SsuB (Acinetobacter radioresistens SK82)
MQHTEFNTREYFDKIYARPVILEAKQLTQKFSHGKTERTVLNALNLKIHKREFICVIGPS
GCGKSTFSRVVAGLDPYSSGEILVDGQPITSPSPERGMVFQGYTLFPWKTVKENVMFGPR
MKGQSSAVAEAQAREWINIIGLEKYENQYPHELSGGMKQRVAIARALVNEPKILLMDEPF
GALDPHTRQKMQRHLMDLWQNIDITIIFVTHDMDEAILLADRIVALKANPGEIKEIIEVD
LPRPRHPELMLTPEFKQLRQHVDHLVHAEEDELDPALAELPVIPRMTKVSSKK