Protein Info for MPMX26_00757 in Acinetobacter radioresistens SK82

Annotation: Inner membrane protein YedI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 71 to 99 (29 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 215 to 243 (29 residues), see Phobius details amino acids 273 to 298 (26 residues), see Phobius details PF05661: DUF808" amino acids 3 to 293 (291 residues), 381.3 bits, see alignment E=1.5e-118

Best Hits

Swiss-Prot: 65% identical to YEDI_ECOLI: Inner membrane protein YedI (yedI) from Escherichia coli (strain K12)

KEGG orthology group: K09781, hypothetical protein (inferred from 78% identity to acd:AOLE_03745)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>MPMX26_00757 Inner membrane protein YedI (Acinetobacter radioresistens SK82)
MASSLLLLLDDIATILDDVAVMSKMAAKKTAGVLGDDLALNAQQVSGVRSDRELPVVWSV
AKGSFVNKVILVPLALLISVVAPWLISPLLMIGGLFLCYEGIEKVLHSLQRKKPHSPEEA
IAKLEQDDIDLHAYEKDKVKGAIRTDFILSAEIVVISLGTVAAASFMTKVTVLSIIAIVM
TIGVYGLVAMIVKIDDLGLHLTEQVSNFKQRIGQALLSFAPILMKTLSIVGTIAMFLVGG
GIINHAVPLIHHFTEDTVDHVELIPTLGHIVGAITPTLINLGIGIVAGFIVLLLVSGVKK
IWPKSKQKSA