Protein Info for MPMX26_00635 in Acinetobacter radioresistens SK82

Annotation: Peptide antibiotic transporter SbmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 93 to 118 (26 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 209 to 228 (20 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 313 to 330 (18 residues), see Phobius details amino acids 336 to 357 (22 residues), see Phobius details PF05992: SbmA_BacA" amino acids 85 to 397 (313 residues), 527.1 bits, see alignment E=1.8e-162 PF06472: ABC_membrane_2" amino acids 99 to 287 (189 residues), 43.8 bits, see alignment E=2.2e-15

Best Hits

Swiss-Prot: 60% identical to SBMA_ECOLI: Peptide antibiotic transporter SbmA (sbmA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 80% identity to aci:ACIAD0809)

MetaCyc: 60% identical to peptide antibiotic/peptide nucleic acid transporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-205A

Predicted SEED Role

"SbmA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>MPMX26_00635 Peptide antibiotic transporter SbmA (Acinetobacter radioresistens SK82)
MFKSFFPQPKVFFLSLLFWFIVNLLLWYVAGGREWGSWLGFPSDYAQAELPIGVSRFWSP
AFLWFYLWFFVATAIFAIFWRFKANHPWQRWSVWGSAFILFNIWFSVQVSVAINAWYGPF
WDLIQRMLSSGGGNIRDLYMGTLTFLYIAMVAVTIMVINAFFTSHYIFRWRTAMNEYYTA
HWDRLRHVEGASQRVQEDTMRFATIMEDLGVELIKAVMVLVAFLPILFELSRHVPELPLV
GQVEHSLVWAAIVWAIFGTVLLMVVGVKLPGLEFNNQKVEAAYRKELVYGEDYADRAQPA
TLKELFSRVRQNYFRLYFHYAYFNLVATWYRQLDILYSLVVLFPAIAAGKMTLGLINQIG
NVFDKVRESFQYLIMSWKTIIELLSIYKRLKTFEAVLDD