Protein Info for MPMX26_00605 in Acinetobacter radioresistens SK82

Annotation: Inner membrane metabolite transport protein YhjE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 21 to 48 (28 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 118 to 142 (25 residues), see Phobius details amino acids 160 to 184 (25 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 247 to 272 (26 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 375 to 395 (21 residues), see Phobius details amino acids 405 to 425 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 23 to 229 (207 residues), 85.6 bits, see alignment E=3.5e-28 amino acids 246 to 432 (187 residues), 37.8 bits, see alignment E=1.2e-13 PF07690: MFS_1" amino acids 28 to 385 (358 residues), 86.5 bits, see alignment E=1.8e-28 TIGR00883: MFS transporter, metabolite:H+ symporter (MHS) family protein" amino acids 28 to 419 (392 residues), 462 bits, see alignment E=9.1e-143

Best Hits

Swiss-Prot: 58% identical to YHJE_ECOLI: Inner membrane metabolite transport protein YhjE (yhjE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 90% identity to abm:ABSDF0584)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>MPMX26_00605 Inner membrane metabolite transport protein YhjE (Acinetobacter radioresistens SK82)
MASSTTTAATTEVATNSKARVLFASLVGTTIEFFDFYIYATAAVIVFPHLFFPAGSGSAA
VLQSLATFAIAFIARPIGAALFGHLGDRIGRKATLIAALLTMGISTVCIGLLPTYAQIGI
IAPLLLALCRLGQGLGLGGEWSGAVLLATENAPEGKRAWYGMFPQLGAPIGFILATGSFL
LLGALMSEEAFLQWGWRIPFIASAALVIVGLYIRLKLHETPAFQKVLDKQKEVNIPFKEV
FTKHFSMLVLGTVAAICTFVVFYLTTVFALNWATTQLGYSRGEFLELQLIATLCFAAFIP
LSAVFAEKFGRKATSIGVCIAAALFGLVFSSMLESGSTLVVFLFLCTGLAIMGMTYGPIG
TVLSELFPTSVRYTGSALTFNLAGIFGASFAPLIATKLAENYGLAAVGYYLSAASILSLI
AFMLIRETKNEDVNNQI