Protein Info for MPMX26_00564 in Acinetobacter radioresistens SK82

Annotation: Phenylalanine--tRNA ligase beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 TIGR00472: phenylalanine--tRNA ligase, beta subunit" amino acids 1 to 791 (791 residues), 854.3 bits, see alignment E=4.8e-261 PF01588: tRNA_bind" amino acids 45 to 145 (101 residues), 92.3 bits, see alignment E=4.1e-30 PF03483: B3_4" amino acids 212 to 384 (173 residues), 228.1 bits, see alignment E=1.4e-71 PF03484: B5" amino acids 405 to 471 (67 residues), 63.5 bits, see alignment E=4.4e-21 PF17759: tRNA_synthFbeta" amino acids 474 to 682 (209 residues), 193.7 bits, see alignment E=7.2e-61 PF03147: FDX-ACB" amino acids 698 to 791 (94 residues), 102 bits, see alignment E=5e-33

Best Hits

Swiss-Prot: 80% identical to SYFB_ACIAD: Phenylalanine--tRNA ligase beta subunit (pheT) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K01890, phenylalanyl-tRNA synthetase beta chain [EC: 6.1.1.20] (inferred from 84% identity to abc:ACICU_00606)

Predicted SEED Role

"Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>MPMX26_00564 Phenylalanine--tRNA ligase beta subunit (Acinetobacter radioresistens SK82)
MKISENWLRSWVNPAIDSETLSNQLTMLGLEVDDMSPAAKPFTGVVVGEVLSVEQHPDAD
RLRVTTVNIGSDEPLQIVCGAPNVRAGMKAAVATIGAVLPGDFKIKKGKLRGVESQGMLC
GASEIDLEDKLDGLLELPDDAPIGMNVREYLNLDDHVIDISITPNRGDCFSIRGIAREIG
VINQLAVTAPEVADVAATIADEKKVIVDTAGCPRYLGRVIKHVNTKAATPLWMEQALARS
GIRQHSILVDITNYVLMELGQPLHAFDAGNVQGAVHVRQANPQEKLVLLNEQEVTLSEDI
MVIADDEKALAIAGIMGGLSSAVSDETTEIFLESAFFAPLAIAGRARRFGLHTDASQRYE
RGVDFELPILAMNRASQLIQELAGGDFGPITVVEQSELLPTRDAIELKQTQVDQLLGYQL
DGEFITDALTRLGCRVEIRAEGHWIVVPPSHRYDLAIYQDLIEEVARIDGYDNIQISLPV
IDVKLAKYQDQLELGQLRQTIATLGYQEAISFSFADAKLEKQLNPQVHPLMLANPISSDL
AAMRSTLLSSLIPCVQYNLNRQQNRVRLFELGLRFDYQNATDISGLQQIPTLALIAVGSR
VPESWHAKAQVMDFFDLKGDVEAILAAARIKVEYVPSERSWLHPGQSAEILVDGKTVGYL
GRLHPSLEDELDLGITWVAELDQKAVLQSYVSNFTELSRFPSVRRDIALLISDKINVSEI
QQLIEQTGSELLHSAWLFDVYTGQGVEEGKRSLAFALLWQHPTRTLEDAEIKSGMDKIIE
VLENTYQATLRAS