Protein Info for MPMX26_00547 in Acinetobacter radioresistens SK82

Annotation: RNase adapter protein RapZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03668: RapZ-like_N" amino acids 4 to 155 (152 residues), 139.9 bits, see alignment E=6.3e-45 PF22740: PapZ_C" amino acids 163 to 280 (118 residues), 149.1 bits, see alignment E=6.8e-48

Best Hits

Swiss-Prot: 92% identical to Y3059_ACIAD: Nucleotide-binding protein ACIAD3059 (ACIAD3059) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 92% identity to aci:ACIAD3059)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>MPMX26_00547 RNase adapter protein RapZ (Acinetobacter radioresistens SK82)
MKRILIVTGQSGSGKSSALQVLEDLGYYCIDNLPLALLTEIVLKLDRENNLEQLALGVDV
RSTRADLQEFDQVFEQLQQHGSVDVIYLTTQDQELIARFSASRRPHPLASRFKSLNECIQ
EEKQLLMPIQFRATVHIDTTDKSVHDLKHTLLSKLGQANRLILILQSFGYKHGIPLDADY
VFDVRHLPNPHWDLELRKYSGLDEPVRKFLESSDQPNEMFLDIYHFLNKWLPAFAKGHRH
YMTVSIGCTGGQHRSVYIVDRLKKSLEAQWSIQVLHREMKHWS