Protein Info for MPMX26_00505 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 PF03354: TerL_ATPase" amino acids 110 to 282 (173 residues), 105.8 bits, see alignment E=2.2e-34 PF20441: TerL_nuclease" amino acids 294 to 580 (287 residues), 111.7 bits, see alignment E=4e-36

Best Hits

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (612 amino acids)

>MPMX26_00505 hypothetical protein (Acinetobacter radioresistens SK82)
MRDYFKITLQYCLDVRSGVRTAGQLEKLAVKRFLSDLSRSGFDTGSVDEETEGLLKKLKF
KAEPDVAFEYELNLERAHHALFFIETCPHVKGKLAKLKPDGTRHTLILEPWQVFATLNMF
GWADLEGKRRFIYVYIEVAKKNGKSTWLAAIALYLGFLDGEMGAEVYTAATSAEQAKIVF
SDAKKMVEYSPKMRTRFGIEFSQYTVFQTETNSVLKALSQDRAGTKDGLNVHGAIIDELH
AHKTADMYDILSNGIAAREEPLIAAISTAGDDTTSKCYQERQVVVDILKNKAVHDQYFGM
IFCLDRGDDWLDPKVWPKANPNYGISVTEKYLHSVFEKVKISPKQESITRQKHLNEWVGA
IDGWISPTVWEKAEDSKVIEESFEGQLCFGGYDLASRLDLASWGRLRPRMKDGKIHWYAF
TSNYISEHVVDTKEAINGEKRPDEYPVWRDQGHLIVTEGNSTDFNRIQRDIEDFHCNNPF
YELGHDPYHAEQLTGNLLSEGINVVEVPQITKFLSEPMRWLEQLLAEGRLHHNGDPVLKW
CICNVTVRPDVNNQILPRKNSPGKKIDAAVGVIIAASRAMHWDREEVFELVPGEDAGNID
DWLQDMIKVAKR