Protein Info for MPMX26_00361 in Acinetobacter radioresistens SK82

Annotation: ABC transporter ATP-binding protein uup

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 PF00005: ABC_tran" amino acids 19 to 183 (165 residues), 92.8 bits, see alignment E=1.3e-29 amino acids 335 to 467 (133 residues), 74.1 bits, see alignment E=8.1e-24 PF12848: ABC_tran_Xtn" amino acids 223 to 296 (74 residues), 46.4 bits, see alignment E=1.5e-15 PF16326: ABC_tran_CTD" amino acids 557 to 625 (69 residues), 69.9 bits, see alignment E=7.8e-23

Best Hits

KEGG orthology group: None (inferred from 90% identity to aby:ABAYE3341)

Predicted SEED Role

"COG0488: ATPase components of ABC transporters with duplicated ATPase domains" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>MPMX26_00361 ABC transporter ATP-binding protein uup (Acinetobacter radioresistens SK82)
MAYITLRDVQLAFGGPALLDGANFTLERGERVCLIGRNGEGKSTLLKLIEGSLLPDRGEV
SIQNGVTISMLAQDVPMDSGKVADIVADGAGEAAQVLKDYHEASDACVLGDMEACDRMGL
LQHKMDQLDGWALENKVNNILSKMGLDPDADLADLSGGRKRRVLLARALLTQPDVLLLDE
PTNHLDVESIEWLEKFLMDQNNLTLLFISHDRSFVDRLATRIVELDRGTLRSFEGNYSRY
LDLKAQQLEAEEKQNALFEKKLAEEEAWIRQGIKARRTRNEGRVRALKTLREESKARRFQ
QGKVNMGVQEAQRSGKLVFDIEHLSVSYDDQVLIKDFSAIVLRGDRIGLVGDNGVGKTTL
IKAILGDIPHQGTVKVGTQLEVAYFDQLRNQLDLEKSVSENVSEGSDFVDVNGQRRHIYS
YLQDFLFSPERARTPVKALSGGERNRVLLAKLLLKPSNLIVMDEPTNDLDMVTLELLEEM
LAEYKGTLLLISHDRAFMDNVVTSTWVFDGKGHIEEYVGGYQDYLMQRPDQKVVDQKADV
KKAQAKAETVTMPKKAKLSYKDQRELEQLPAEIEQLEAEQAQLNEKLADGSWFVTDADAA
TQASQRLSEIEELLLEKLDRWTELEAMSQNG