Protein Info for MPMX26_00238 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 PF02622: DUF179" amino acids 15 to 171 (157 residues), 164.7 bits, see alignment E=8.4e-53

Best Hits

Swiss-Prot: 92% identical to Y401_ACIB5: UPF0301 protein AB57_0401 (AB57_0401) from Acinetobacter baumannii (strain AB0057)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 92% identity to abb:ABBFA_003217)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>MPMX26_00238 hypothetical protein (Acinetobacter radioresistens SK82)
MTKQYLTHRCLIAPPEIADDFFAHTVIYLARHDEDGAQGIIINRPAGIQIKELLNDLEID
ADNVQPHDVLQGGPLRPEAGFVLHTGQPVWHSSIAIGENVCITTSKDILDAIAHNEGVDR
YQIALGYASWSKNQLEEEIARGDWLICDADMDLIFNLPYDDRWDAAYKKMGLDRTWLASE
IGHA