Protein Info for MPMX26_00169 in Acinetobacter radioresistens SK82

Annotation: Tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF02899: Phage_int_SAM_1" amino acids 22 to 99 (78 residues), 48.8 bits, see alignment E=7.2e-17 TIGR02225: tyrosine recombinase XerD" amino acids 25 to 306 (282 residues), 358.4 bits, see alignment E=1.4e-111 PF00589: Phage_integrase" amino acids 123 to 291 (169 residues), 176.6 bits, see alignment E=3.9e-56

Best Hits

Swiss-Prot: 60% identical to XERD_PSEPK: Tyrosine recombinase XerD (xerD) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 88% identity to acd:AOLE_18200)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>MPMX26_00169 Tyrosine recombinase XerD (Acinetobacter radioresistens SK82)
MLNKKPRIPSPVQIPEHLSFLQGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLW
NSEDIADVLFELTKQGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALP
KDLSELDVEHLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRIT
GKGNKERLVPLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYA
LQAGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHA
AHHPRA