Protein Info for MPMX26_00126 in Acinetobacter radioresistens SK82

Annotation: Inner membrane transport protein YnfM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 314 to 337 (24 residues), see Phobius details amino acids 349 to 368 (20 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 360 (336 residues), 145.3 bits, see alignment E=2.3e-46 PF00083: Sugar_tr" amino acids 59 to 199 (141 residues), 32.4 bits, see alignment E=4.9e-12

Best Hits

Swiss-Prot: 45% identical to Y567_BUCAP: Uncharacterized transporter BUsg_567 (BUsg_567) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: K08224, MFS transporter, YNFM family, putative membrane transport protein (inferred from 50% identity to ppu:PP_5072)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>MPMX26_00126 Inner membrane transport protein YnfM (Acinetobacter radioresistens SK82)
MSESVESQSYIEYGTRPFFAILLSLFLAGFAIFSSLYCVQPMMPFLAKFFAISPTHSSFP
LSFSTIALALGLLFAGLISDRYGRKQVMAISLFSTSILLLVSSFLPYWEVFLSTRMLIGL
AVSGVASVAMTYIGEEIAQKDVGFAMGLYISGTAIGGMSGRLIAGVLLDFISWQTATMII
GVLNLIIAIVFYIALPASRHFKPYPINFSRFKQSFTKNLSDSKLRLLFAEGFLLMGCFVT
VFNYISYHLLEKPFELSQTWIGLISIAYLSGIYSSPRAAGWGRKYGRGKVLPAMFICMIL
GLWIMLIPSIWCILLGLLIFTFSFFAAHSTASSWVSVQALQYRAVGSSLYLFCYYLGSSV
LGSSGGLVWENWGWGGLTVIITLFLGLGLIISLGLNRS