Protein Info for MPMX26_00025 in Acinetobacter radioresistens SK82

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 178 to 213 (36 residues), see Phobius details amino acids 229 to 252 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 257 (170 residues), 106.4 bits, see alignment E=7.6e-35

Best Hits

Swiss-Prot: 65% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 84% identity to abn:AB57_0067)

MetaCyc: 65% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>MPMX26_00025 Putative aliphatic sulfonates transport permease protein SsuC (Acinetobacter radioresistens SK82)
MMQKNSIDNYVSRGTGVFRKHLLPWLVPLLLLVLWQLTSMSGLLQSRILPAPTAVLTAFW
SLLISGELWQHVKVSTARALTGLAVGGGLGLLLGLLNGSSKVASNLLDTTLQMLRNIPAL
ALIPLVILWFGIDESAKLFLVAIGVFFPIYINTYHGIRSVDPQLIEMGKSYGLNRRQLYQ
QIILPGAMPSILVGLRFALGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDIVLVGILL
YALLGKLADILAQGLERYLLRWHPGYQQ