Protein Info for MPMX19_06960 in Azospirillum sp. SherDot2

Annotation: Urocanate reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 14 to 31 (18 residues), see Phobius details PF01266: DAO" amino acids 13 to 219 (207 residues), 50.5 bits, see alignment E=7.3e-17 PF05834: Lycopene_cycl" amino acids 13 to 57 (45 residues), 24.7 bits, see alignment 3.8e-09 PF00890: FAD_binding_2" amino acids 13 to 469 (457 residues), 156.1 bits, see alignment E=5.2e-49 PF13450: NAD_binding_8" amino acids 16 to 53 (38 residues), 23.7 bits, see alignment 1.4e-08

Best Hits

KEGG orthology group: None (inferred from 55% identity to reh:H16_A1496)

Predicted SEED Role

"Fumarate reductase flavoprotein subunit (EC 1.3.99.1)" in subsystem Succinate dehydrogenase (EC 1.3.99.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.1

Use Curated BLAST to search for 1.3.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>MPMX19_06960 Urocanate reductase (Azospirillum sp. SherDot2)
MSEHPIGDLAISDLVIVGCGIAGLSAAVTALQAGLSVTLLERAPEEDFGGNSRWTEAYMR
MKNDSEISDDFEEHFAANAGLNIDPNVLAAAAEPYEHWPDYVKAHPFPDPEVISRFAERV
PPTIAWLKGFGLRFEPQPIYLLTQNTQRIAAQGGGLALIERLMAEAKALGARVLYRTTAL
DLLRDDQGRIGGVHATGTDGLRVAIRGRSTILASGGYQGNPEMMTRYMGQRAKHVRPVAR
GGYYNRGEGIRMALDAGAAAAGDFGSYHAEPVDPRSRQPEAVIFIWPYGVLVNKRGERFL
DEAPGTADATYDHITRIVADQPDGIAYVLFDDQVEDIPRWRTSIRSDVPAIEAPTLDALV
EKLGLPPDATLATVAAYNAACPADASRFDPTRVDGLATTGLSPAKTNWARPLTKGPFRAF
PIVSANCFTFGGLKVDADARVLDGNGRPMPGLYAAGETVGLYHQVYTGSTSVLRGAVFGR
LAAQHAAASSDAG