Protein Info for MPMX19_06954 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 48 to 76 (29 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 44 to 291 (248 residues), 123.7 bits, see alignment E=4e-40

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 80% identity to azl:AZL_014100)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>MPMX19_06954 hypothetical protein (Azospirillum sp. SherDot2)
MTMQTRDTLHEGIVMYGGSPKILLAGAGLLLAVLAPYALYPVFLMKVLCFALFACAFNLL
IGFAGLLSFGHAAFFGGAAYIAAHVVKEWGWAPEFGLIAATAVAGLMGLVFGLIAIRRQG
IYFAMITLALSQMVFFLALQLPFTHGEDGIQGVPRGTLFGLFDLGQPLTMYYTVLAIFVA
GFALIWRTVHSPFGQVLKAIRENEPRAVSLGYRTDRYKLVAFVLSASLAGLAGGTKALVF
QLASLTDVTWQMSGEVVLMTLLGGMGTLFGPVVGAGLVVTLESYLAATSLPVPVVIGCIF
VVCVLVFRRGIVGELLHRLPGKGKR