Protein Info for MPMX19_06876 in Azospirillum sp. SherDot2

Annotation: Inner membrane amino-acid ABC transporter permease protein YhdY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 22 to 47 (26 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 190 to 217 (28 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 284 to 309 (26 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 151 to 247 (97 residues), 58.9 bits, see alignment E=2.9e-20 PF00528: BPD_transp_1" amino acids 169 to 357 (189 residues), 72 bits, see alignment E=2.8e-24

Best Hits

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 94% identity to azl:AZL_a01050)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>MPMX19_06876 Inner membrane amino-acid ABC transporter permease protein YhdY (Azospirillum sp. SherDot2)
MTDGVLQSAPPLTSPQPRWQRLWASLFGTPLNAAVTLCCLALLGWAVPPLLRWTLLDAVW
VGPADRCTDAAGACWAFIGEKLRYILFGFYDQDRQWRPAVAGAILLALAGLSGMPLFWRR
ATLWLWLFGLAAALLLLTGGPGGPAVPTERWSGLPVSLLLAVVGLAGAFPLAVLLALARR
SSMGGVRTLAVLFIEVTRGVPLIAVLYVATLLLPLMLPAGAAIDKLLRAQIAIILFVSAY
LAEIVRAGLQSIPAGQYEAAQALGLGYWQSTRLVILPQALRTVIPSIVTLAIGLFQDTTL
IIVIGLFDLLNTARTAAKDPAWLGFYDEAFGFAALIYLTVCVIASRYSLWLERRLRRC