Protein Info for MPMX19_06707 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 TIGR00229: PAS domain S-box protein" amino acids 16 to 140 (125 residues), 84.4 bits, see alignment E=3.7e-28 PF00989: PAS" amino acids 18 to 130 (113 residues), 52.9 bits, see alignment E=1.3e-17 PF08448: PAS_4" amino acids 30 to 134 (105 residues), 54.7 bits, see alignment E=3.9e-18 PF13426: PAS_9" amino acids 30 to 132 (103 residues), 56.4 bits, see alignment E=1.1e-18 PF08447: PAS_3" amino acids 42 to 122 (81 residues), 31.8 bits, see alignment E=5e-11 PF02518: HATPase_c" amino acids 264 to 385 (122 residues), 67.7 bits, see alignment E=4.3e-22 PF00072: Response_reg" amino acids 415 to 506 (92 residues), 50.8 bits, see alignment E=6.1e-17

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>MPMX19_06707 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MKDERVAPAWEPISGERQFRLLVQSVVDYAIFMLDPTGVVRSWNAGAARMKGYAADEIIG
RHFSSFYTPEDRAADMPQRALATALSEGRFEAEGWRLRKDGTRFWASVVIDPIRDETGIL
RGFAKITRDITERRKAQQALDEAREALAQAQKMEAVGQLTGGVAHDFNNLLQAISSSLEL
IDQRLSAGRSDIAPFTATARAAVDRAATLTRRLLAFARRQPLKPERVDLNALVAGLWDLL
GRSVGEQIRLERRLGEPLWPVHADVNQIESALLNLVINARDAMPDGGCVTVETANAAFAP
ADLVNDPGVEAGDYAVLTVRDSGTGMPPDVLARAFEPFFTTKPIGQGTGLGLSQLYGFAR
QSGGFVRIDSAVGRGTAVHLHLPRDHAAAAACTGRAEPAAVPALPPPGRTGRGTVLVVED
EELVRMLLVEVLESDGYTTLEAADGTSALAQLTNAQAGTKGVAGANPPVDLLVTDVGLPG
LNGRQLAEAAQAHYPDLKVLFLTGYAFQALDDRHGDGEDGLGHNMRMLAKPVAVDAFRAM
VRKLLSDGLSDSPSDGPAGG