Protein Info for MPMX19_06704 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 749 signal peptide" amino acids 12 to 13 (2 residues), see Phobius details transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 294 to 316 (23 residues), see Phobius details PF02743: dCache_1" amino acids 40 to 279 (240 residues), 79.2 bits, see alignment E=6.6e-26 PF00512: HisKA" amino acids 355 to 419 (65 residues), 29.9 bits, see alignment E=9.5e-11 PF02518: HATPase_c" amino acids 463 to 584 (122 residues), 68.1 bits, see alignment E=1.8e-22 PF00072: Response_reg" amino acids 622 to 731 (110 residues), 72.6 bits, see alignment E=6.1e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (749 amino acids)

>MPMX19_06704 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MLRLLKENRPLQRIGALGIGLLAVLCGGTAMVLDRLHDETVTEAMLGLRTLNASLAEQTA
RTIEGIDLTVSGIAEQIPLENRHSPEAFSRLRTDRQVYEILKAKASSLPQMEALSLIAAD
GTLVNFTRQFPAPVLDLSQRDYYLTLKDADPGRAYLSRPTKSLVTRDWTLYIARRVNDPD
GRLAGLVVGVIRLSYFEQFYRSLHVTPGSGFSLWWRDGMLLARFPPTPDRIGIVATDPII
DSQLSQSGTAATTLKSSIDGEDRILSVQQLRNYPLVVAVSRTRGEILARWESQAVVIAAA
GLVSAVAVALMLWAMARQFLAYETANRALGERRQAVEARDEAEEHVRQLQKMEALGQLTG
GVAHDFNNLLQAVRSSLHMLEAGGELRGAESRRALEVASQAVDRGATLTQHLLAFARRQR
LAPAPVDLGAQVLGMATLLERTLGGAIRIRIDLDADVPPALVDPHQFDIALLNLAINARD
AMPDGGTLTVTVSSLPVGTVGEGISPALAPGGYVAVTVRDSGTGMPPDVLARACDPFFTT
KPVGQGSGLGLSMVHGLTAQSGGGIRLESHPGLGTAVTLYLPHAPAESLAEIGPGSRADA
PGGPAASTGTEPLPVPSAALRILLVEDDALVRMANAAVLDEAGLMVSEAASGEEALALLE
ADEDIGVLVTDFAMPGMTGADLTRLVRRHRPGLPVLIVTGYAEKAVLQDLGREPGIRILS
KPIPPSALIGHIMTALRDPRAAMGADIGC