Protein Info for MPMX19_06587 in Azospirillum sp. SherDot2

Annotation: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 PF01041: DegT_DnrJ_EryC1" amino acids 32 to 390 (359 residues), 398.4 bits, see alignment E=5.2e-123 PF13578: Methyltransf_24" amino acids 460 to 613 (154 residues), 57.8 bits, see alignment E=2.8e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>MPMX19_06587 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (Azospirillum sp. SherDot2)
MAIQADQTDSGNASSRNAGTPTAIPFYCHDLGHAEASSVARALKGPILTTGALVEEFEQR
FAALLGRRHALAVTSCTGALHMSLLALGIGAGDEVITTPMTFVATAAAILQVGATPVFVD
VEPETGNLDVERVAAAITPRTRAIIPVHLYGLMCDMRRLRAVADAHGLAIIEDAAHCIEG
RRDDAVPGSLSNVACFSFYATKNLNCGEGGALVTDDSELYRKLKLLRLHGIDRDLAQRYT
SGSSDWDMVAMGWKYNMSNIEAALLLPQLQRLSQNYARRDRLAKLYRHHLETVPGIRLPA
TPEGAINAFHLFPVWISEGRRDEVRQRLRDRGIGCVVNYHPVHLTRYFRESFGYERGNFP
EAERIGNETLSLPFYPSMPDAHVEAVAEALAEVLGSGLRADGRPADRLERPVTVAAEPVP
SISQVIASLIDHVPGFSDHDELMALYSLAVGTAGLGGDIVEVGSWCGRSTIVLALAARAS
NGRVHAIDLFPTREDWASNPDGSWSFTTQVHGRSVTAYSAQTVWAEPFLRAMMPVYDGGS
ILDQFLRNLERFNVRDLVSVNQGTAEDFAQRAPAGLRCRMGFIDGEHSFPAVSRDLAVIR
RFAVAGTVVCFDDAFSGYYPGVDQAITDNVIASDDFDMRMQMTRKLFVARLASDKK