Protein Info for MPMX19_06557 in Azospirillum sp. SherDot2

Annotation: Leukotoxin export protein LtxD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 73 to 91 (19 residues), see Phobius details TIGR01843: type I secretion membrane fusion protein, HlyD family" amino acids 68 to 502 (435 residues), 398.3 bits, see alignment E=2.2e-123 PF13533: Biotin_lipoyl_2" amino acids 112 to 145 (34 residues), 32.8 bits, see alignment (E = 6.9e-12) PF13437: HlyD_3" amino acids 339 to 469 (131 residues), 58.8 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 43% identity to bra:BRADO2765)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>MPMX19_06557 Leukotoxin export protein LtxD (Azospirillum sp. SherDot2)
MSKTTAAVTTTPATSAPIPPGIKPPANAPGTPGGPRPPTKLQGRPQKRRRDEMDFLPDAL
EILERPPSPTARTFTAVIMLAFTAACAWAWFGHVDVVAVAQGRVVPSGRTKTIQPMQTGV
VRAIAVEDGQLVKAGQTLIELDPTEAVADRGRIRSDLSAARAEAARLRAALEVVNGNPDA
EFAAPAGLSPELARMQGQLLASQIAEQRAKLAALDREQARREADRATVVQTIAKLNATLP
LIRERAEALYDLSKRGTSSRFQYLQLQQDLVGQEQELLVQKIKLTESDASIAATAEQRRQ
TEAEFRRQLYTNLAEAERKAASLEQELAKAEQQVDLLRLTAPVDGYVQQLAVHTVGGVVT
TAQPVMVIVPEDSRLEVEAFIPNKDIGFVQTGQVAEVKVEAFSFTKYGLIPGRVASLSSD
AVQQQQQADKGADKSAAKTPEAGSVYAARIALDRDTLEVDGKQTRLQPGMTVSAEIKTGR
RRIADYLLSPLSRSAQEAMHER