Protein Info for MPMX19_06490 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 93 to 116 (24 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 195 to 239 (45 residues), see Phobius details amino acids 246 to 269 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 107 to 275 (169 residues), 90 bits, see alignment E=8e-30

Best Hits

Swiss-Prot: 57% identical to TAUC_ECOLI: Taurine transport system permease protein TauC (tauC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 90% identity to azl:AZL_b02670)

MetaCyc: 57% identical to taurine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-64-RXN [EC: 7.6.2.7]

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" in subsystem Alkanesulfonate assimilation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>MPMX19_06490 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MTDIARPGDRAVGPVDRPKIVRLHPFGLDGARTGPISLATAALLLAAWFLVTHYRLVPPL
FLPPPEEVATQFLAILDDGYAGATLWEHVSASLFRIFSAAVIAASLGIPLGLAMGLNRWA
KGVFDTPIEFYWPLPPLAYLPLMIIWLGIGEVSKIVLLTLAMFAPVCLSAQAGVRSLPIE
RVNAALSLGASRWQLFRAIVLPSALPEILTGLRIGIGVGWSTLVAAELIAATRGIGFMIM
SASHFLATDVVFVGIGIIAVFAFAFSYGMRLLEAWLVPWKGKS