Protein Info for MPMX19_06473 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF09084: NMT1" amino acids 81 to 199 (119 residues), 49.1 bits, see alignment E=7e-17 PF12974: Phosphonate-bd" amino acids 83 to 251 (169 residues), 34.1 bits, see alignment E=2.1e-12

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 90% identity to azl:AZL_b02550)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>MPMX19_06473 Putative aliphatic sulfonates-binding protein (Azospirillum sp. SherDot2)
MTTDIVRLPSTPLGRRNLLRGACGALALGTLPGLAQAASGPASETVLRIADYKALDGLAL
DASGNAGSSFRSQFAEFASGNLIVEAINAGSIDVGSSSEIPPAFGIAAGARLSIVAVVKD
DVNWQVVLVPPGSPIRSVADLKGKRVGYVRATTTQYYLAKMLGEAGLRFTDIQAISLTPS
EGQAAFEQGALDAWAIYGYSVPFAIKKGARVLVTSNGYLSGNYLYLASPDALADPGKSAA
IGDYFLRLRRAFAWRAANLERWAQVHSAAIGVPVETDLEILRKNSRQRDLAPITDADIAS
AQNVADTFHQLSVLPKRIDIAPAFDRRFTDILSRPLS