Protein Info for MPMX19_06395 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YqaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 91 to 115 (25 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details PF09335: SNARE_assoc" amino acids 27 to 140 (114 residues), 51.2 bits, see alignment E=8.6e-18

Best Hits

KEGG orthology group: None (inferred from 60% identity to azl:AZL_e02900)

Predicted SEED Role

"probable membrane protein YPO3302"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>MPMX19_06395 Inner membrane protein YqaA (Azospirillum sp. SherDot2)
MDDFAGLAGLFSAALLAATILPAQSEVVLAGMHMAETHSTLTLVLVATVGNVLGSVVNWL
LGRYLIHFSNRRWFPIKASLIDRATAWYQKWGVWSLLLAWAPFIGDPLTLVAGVLRENFC
VFLLLVTIGKAARYVALVVAV