Protein Info for MPMX19_06248 in Azospirillum sp. SherDot2

Annotation: Zinc transporter ZitB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 128 to 153 (26 residues), see Phobius details amino acids 174 to 198 (25 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 24 to 315 (292 residues), 133.7 bits, see alignment E=3.9e-43 PF01545: Cation_efflux" amino acids 27 to 233 (207 residues), 127.5 bits, see alignment E=3e-41

Best Hits

KEGG orthology group: None (inferred from 52% identity to mpo:Mpop_4836)

Predicted SEED Role

"Cation transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>MPMX19_06248 Zinc transporter ZitB (Azospirillum sp. SherDot2)
MRDAMAGTSGAALANEMEDGESGKVVLAAIAANLAITVTKFVAALITGSASMLSEAVHSL
VDTGNEALMLVGLKRSKKLPDERHPFGYARELYFWTFVVALVIFAGGAVVSIYEGVEKIL
HPQPVESAWINFVVLGVAFVMEAISWVVALRAFNADRGEAGVFETVHASKDPTVFIVLFE
DSAALVGLIVAAACLSADLLLDQPVYDGVGSILIGLVLAATAAFLAYETKSLLIGEAARP
DLVHGVRALVREEEAVDHVNEVLTIHLGPKVVIVNLSLDVRDEVSAGEVERTLARIERRV
KERFPEIRRVFTEVRAAGDRPNLADG