Protein Info for MPMX19_06237 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 30 to 53 (24 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 141 to 166 (26 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 243 to 268 (26 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 20 to 274 (255 residues), 88.7 bits, see alignment E=2.8e-29 PF03631: Virul_fac_BrkB" amino acids 20 to 277 (258 residues), 176.2 bits, see alignment E=5.1e-56

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 52% identity to gbe:GbCGDNIH1_2396)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (319 amino acids)

>MPMX19_06237 hypothetical protein (Azospirillum sp. SherDot2)
MGSVRRGWAIVVDAAYGWMNDDAMSMAASIAFYTIFSLAPLAILVIALAGLVFGDEAARG
ALVDQLTTLVGHDAGETLQDLIARAGAKETGIVASVIGIGTILVGATTVFVELQAGLNRI
WRVAAPQESTITWLVRVRLKALALIGAIGFLLIVSLVVSAGLAAAGRWASAYLPAMPSLL
WLFDVLVSWTVLTGLFALIYRILPDAYIRWADVWLGAAVNAFLFAVGKFLIGFYIATSGV
VSVYGAAGSFVLILLWVYYSAVIFLFGAELTRAYSERSGSRARLPGLKPEAGPAPAPGPG
EGATVRSSPVPESSGSAAP