Protein Info for MPMX19_06142 in Azospirillum sp. SherDot2

Annotation: putative ribonucleotide transport ATP-binding protein mkl

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00005: ABC_tran" amino acids 21 to 171 (151 residues), 111.9 bits, see alignment E=3.7e-36

Best Hits

Swiss-Prot: 40% identical to MLAF_HAEIN: Intermembrane phospholipid transport system ATP-binding protein MlaF (mlaF) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 97% identity to azl:AZL_e01700)

MetaCyc: 39% identical to glutamate/aspartate ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-13-RXN [EC: 7.4.2.1]; 7.4.2.1 [EC: 7.4.2.1]

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>MPMX19_06142 putative ribonucleotide transport ATP-binding protein mkl (Azospirillum sp. SherDot2)
MTVPKIALKNVTKHFGPKKVLNGIDLEVAKGESLVVIGGSGTGKSVMLKSILGLLTPDSG
SIQVDGVETTRLRSREREKLLHKFGMLFQGAALFDSLKVWENVAFGLIQGAHMPRAQAKE
IAVAKLGAVGLTPDVAELSPSELSGGMQKRVGLARAIADEPEIIFFDEPTTGLDPIMADV
INELIVQCVKDLGATAVTITHDMASARKIADRIAMIYQGRIIWTGHARDIDNSGNAYVDQ
FVHGRADGPIKMQIKAL