Protein Info for MPMX19_06128 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 333 to 357 (25 residues), see Phobius details PF03924: CHASE" amino acids 104 to 291 (188 residues), 153.6 bits, see alignment E=1.4e-48 TIGR00229: PAS domain S-box protein" amino acids 377 to 495 (119 residues), 29.6 bits, see alignment E=6.3e-11 PF08448: PAS_4" amino acids 385 to 491 (107 residues), 26.5 bits, see alignment E=1.6e-09 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 497 to 659 (163 residues), 148.4 bits, see alignment E=1.6e-47 PF00990: GGDEF" amino acids 500 to 656 (157 residues), 173 bits, see alignment E=1.1e-54 PF00563: EAL" amino acids 678 to 912 (235 residues), 260.1 bits, see alignment E=4.5e-81

Best Hits

KEGG orthology group: None (inferred from 85% identity to azl:AZL_e01830)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (943 amino acids)

>MPMX19_06128 hypothetical protein (Azospirillum sp. SherDot2)
MPEPAADPKADPVADSPSASGPNPTARRIMRNLHVPVAVPLLALIVGTGLSLLAMLQSER
LLASEEAHRFSARVEEFHGQLADRIKVYEQVARSAASLAMTFPDLHWTQWTRFVEALDMP
QRYPGIISIAYARAVAADRSGDLVASMRASGLTAFRIWPEHAGADRVVNIFTAPVNEANV
RAIGFDMMSEAVRRSAIERARDSGEPAATRAITLKIDEAAGARPAFILYQATYRGDPLPP
SLEARRASFTGVVLTPVRIGPLVDGLIDGQRADTGLEIYDVPPAEAEFPLYRSHRPLETK
PAISLDRELPVGGRVWTVRYDSLPDGVITAHDWVPGALLAVGIALSIALSLVLRMVLVIH
SRAVELAGEMTASLRLQEAERQQLFTQAPLGIALVGTDGLVMDCNPAFASAAGLLRQDLL
GTDARLRFGDQASVFALEAALHGESGKLESDQPLLMGGRRSHFSLHFQPVTAGGALKFVL
AFAEDIGEKRRAEQHIQYLAHFDALTGLPNRVLLYDRIAQALREGRRDGSKVAVLFIDLD
RFKVINDSLGHSFGDEVLRSVARRLQAGLRESDTVGRLGGDEFLIVVRRVAEPGDAARVA
EKVVAHLASPFAVGGQNFVVTPSIGISLYPDDADDPEGLIRCADIAMYHAKEQGRNGFRF
VTKEMGAKSRERMDLEGALRQAIREGELFLVYQPQVDTLTGRMVGLEALVRWRHPDEGLI
LPGRFLPVAEETGLVLAMGDWVLFEACAQIRRWRQRFDLSIPVAVNVSGAQFRDGQLPVK
VARALDANGLSGCELEIEVTESTLIDDVESAAATLAALKQRGVLIALDDFGTGYSSLSYL
HRLPIDKLKIDRSFIHDLSIGASDASVPRAIVGLGRSLGLSVIAEGVETQEQLQLLRDLA
CESYQGFLFSRPIPPEEIERLLEKLTAVQSPPMQPPVQPVSAE