Protein Info for MPMX19_06117 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 176 to 195 (20 residues), see Phobius details amino acids 215 to 235 (21 residues), see Phobius details amino acids 247 to 270 (24 residues), see Phobius details amino acids 309 to 339 (31 residues), see Phobius details amino acids 354 to 379 (26 residues), see Phobius details amino acids 398 to 420 (23 residues), see Phobius details PF13466: STAS_2" amino acids 63 to 140 (78 residues), 42.4 bits, see alignment E=6.3e-15 TIGR00056: ABC transport permease subunit" amino acids 185 to 418 (234 residues), 242.4 bits, see alignment E=3.2e-76 PF02405: MlaE" amino acids 207 to 416 (210 residues), 253.5 bits, see alignment E=1.5e-79

Best Hits

KEGG orthology group: K02066, putative ABC transport system permease protein (inferred from 87% identity to azl:AZL_e01940)

Predicted SEED Role

"ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>MPMX19_06117 hypothetical protein (Azospirillum sp. SherDot2)
MGLTIRRCSATFQACRPNVPVDVRMRAAEPVAATLAKDGAAKDGARIEAGNDPGLADGGW
RIAAAGRWTLQWATAASDALDRAPKPPGGAVVRLDLAQVEALDTVGAYLLNRLAERLGAD
GHAVSVAGLRPEHSALFDAVRDAGKAPPHPIEREHHPILDMVVRTGQTTVNAAKEILDLV
GFLGLVTVTFARLILRPSRLRLTSVLFHIEQTGLNALPILGLLSFLIGVVLAFQGADQLK
RFGAELYVVNLLGISVLREIGILMTAIIVAGRSGSAFTAQIGTMKVNQEVDAIGTMGLDP
VELLVVPRALALMITLPLLAFYADVMGLFGGAVMAYATLDITFGQFIRQLHSAVGINTVI
AGLIKAPVFALVIAMVGCYEGLKVSGSAESVGIMTTKAVVEGIFLVIVIDAVFSVLFSML
GV