Protein Info for MPMX19_06116 in Azospirillum sp. SherDot2
Annotation: putative ribonucleotide transport ATP-binding protein mkl
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 40% identical to MLAF_ECOL6: Intermembrane phospholipid transport system ATP-binding protein MlaF (mlaF) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 95% identity to azl:AZL_e01950)Predicted SEED Role
"ABC transporter ATP-binding protein USSDB6B"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (273 amino acids)
>MPMX19_06116 putative ribonucleotide transport ATP-binding protein mkl (Azospirillum sp. SherDot2) MAGSPVIRVRGLVTRFGPQTVHDGLDLDVERGEVLGVVGGSGTGKSVLLKEILGLIDPAA GRIELLGHDTADLDRAERTALQARTGVLFQNGALFSSMTVAENVMLPLKEHTDLSPALIA EVARVKIAMAGLPPDAGTKHPAQLSGGMIKRAGLARALALDPDILFLDEPTAGLDPIGAA AFDTLIQGLQRSLGLTVFMVTHDLDSLTSICDRIAVLVDKKIRVGTLAQHLADPHPWIHD YFHGPRGRAALDAKERNQARRHEEEDARRLAKG