Protein Info for MPMX19_06055 in Azospirillum sp. SherDot2

Annotation: Vitamin B12 import ATP-binding protein BtuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 PF00005: ABC_tran" amino acids 26 to 168 (143 residues), 124 bits, see alignment E=7.2e-40 PF08402: TOBE_2" amino acids 284 to 351 (68 residues), 28.4 bits, see alignment E=1.5e-10

Best Hits

Swiss-Prot: 47% identical to FBPC_AGRFC: Fe(3+) ions import ATP-binding protein FbpC (fbpC) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: None (inferred from 96% identity to azl:AZL_e02250)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>MPMX19_06055 Vitamin B12 import ATP-binding protein BtuD (Azospirillum sp. SherDot2)
MTVGATTFKQLHLQGVRREFDAFTALKGLDLTIERGEFIALLGPSGCGKTTALNCIAGLL
PVSGGRIMLDDRRVDVLRPEERGFGMVFQNYALFPHMTVRKNIGFGLRMRGVPKPELEKR
VDAALAAVRLESQAEKLPGQLSGGQQQRVAIARAIVVEPPLVLMDEPLSNLDAKLRLEMR
QEIRRIHQSLGSTTIYVTHDQEEALSLADRIVVLRDGAIRQVGTPAELYALPAHLDVADF
MGFRNRVNGELVGMEGEDALLNIEGTVIRGRMRAASASKAAVAAIRPDDLEPTGTDSGIP
VRVEAVEYRGRGFHGVGVTASGTELHFASPYPLQRGAAVRLGADAGRVLVFGDAR