Protein Info for MPMX19_06039 in Azospirillum sp. SherDot2

Annotation: Putative multidrug export ATP-binding/permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 602 transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 68 to 90 (23 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 37 to 302 (266 residues), 55.1 bits, see alignment E=9.6e-19 PF00005: ABC_tran" amino acids 372 to 520 (149 residues), 111.6 bits, see alignment E=5e-36

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 95% identity to azl:AZL_e02340)

Predicted SEED Role

"Transport ATP-binding protein CydCD" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (602 amino acids)

>MPMX19_06039 Putative multidrug export ATP-binding/permease protein (Azospirillum sp. SherDot2)
MAQSKRTPRPNAIRSVLAFTFRHWSRQTPLAVGIAGAIALSTLADVFMPLFAGRLVDALT
MLPGDRDAALHAALTAFGAMVALGVGMVVMRHIAWSSVIPFTLRIMADVGQDSFHRIQRF
STDWHANSFAGSVVRKITRGMWALDTLDDTLLLALWPSLVVLIGTMVTLGLHWPAMGLVI
ALGTAIYIAMTVLFSTLYIAPAARLSNAWDTKLGGTLADAIGCNAVVKAFGAEPREDDRL
STVVGKWSRRTHRTWTRHTRHSTVQLVLLLLIRSAVVATALWLWWRGQATPGDVAYVLTT
YFVVHGYLRDIGMHINHLQRSVNEMEELVAIHAEPLGVEDRPDAIPIRIGAGEVRFDLVT
FQYGGHTTPLYRDLSLTIEAGERVGLVGPSGSGKTTFVKLIQRLYDVTGGRVLIDGQEVA
GATQHSLRSQIAIVPQEPILFHRTLAENIAYGRPGASMAEIERAAKLANAHDFIVRLPKG
YATLVGERGVKLSGGERQRVALARAFLADAPILILDEATSSLDSESEALIQEAIERLMQG
RTAIIIAHRLSTVRTLDRILVFKQGRVVEEGSHAVLLHRPGGLYRRLFEQQSAPEPVRRI
GG