Protein Info for MPMX19_05855 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 221 to 251 (31 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 276 (268 residues), 116.9 bits, see alignment E=4.8e-38

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 94% identity to azl:AZL_d00550)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>MPMX19_05855 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
METMFGIAVDGVAYGMILFIISVGLSVTLGLMRVVNLAHGAFAMVGGYVASYAAQSAGLS
YGLALVVAVALTVLATLPLERLLYRRIYGSANELAQVLLTIGLTFVIVAGINYLFGPTLK
RIPLPDLLTGTVQLGPKSIPTHRAFVIGAGAATLLGLWWLLERTDFGIRLRAAVDDPAMA
AALGIRTERLYLATFALGTGLAALGGVLGAELLPLEPYYAIRYIVLFLAVVAVGGAGSIF
GSAAAALALGIVDTAGKYLIPNFGEFFFYAALILILFRWPHGFFKGRTA