Protein Info for MPMX19_05822 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 930 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 283 to 303 (21 residues), see Phobius details PF00512: HisKA" amino acids 360 to 429 (70 residues), 62.3 bits, see alignment 5.4e-21 PF02518: HATPase_c" amino acids 475 to 586 (112 residues), 94.7 bits, see alignment E=7.5e-31 PF00072: Response_reg" amino acids 649 to 759 (111 residues), 49.9 bits, see alignment E=5e-17 amino acids 805 to 916 (112 residues), 87.2 bits, see alignment E=1.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (930 amino acids)

>MPMX19_05822 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MGRFLRGALVVVVVLAALAGNAAHRVYYDYQDTQQRRFALVQDMARLVDDHVRRTVHTAD
VALDQTAAMVAEARGLQKLRDLKHWARLREYAAQVEGADAIWIYDADGRAVLESASFPNR
IADFADQSGLEALRGGMRLHIGAAQPVRTGSYPLVFPVSRPLHDDEGRFVGVASVSIRVN
HLTDFYSIPGFEFDPLIAVYRPNGEVVARRPEPEASAGRTAAAAPLFQSRLREAPEGQLL
SASPLDGVLRIAAYRTVRDYGLVVLAGIDREEAMAVWRTRTLHTVVETLVGLLAVLGMLA
WGMRYLDRERKAQVALAEARNAVERTSAERDESARLATALNHARDMAESARQAAEAANRA
KGEFLAGLSHELRTPLNAVIGFADLIAREAEGPVGTPSYRQYAANVRDSGQHVLELINEI
LDHARAEAGALTIEEGHCDLEAAADFAVRMLTPRAERAGVLLSAVVAPAVGALRGDDRRI
RQILLNLIANGVKYTPSGGSVTLSALLEDGTPVIRITDTGLGIPAEDLDRVLEPFARVES
ADHRGVEGAGLGLPLTKRLVELHGGTLALRSTLGVGTTVTVRLPANRLLPAEALGMPATP
PARPAPATNSAASSAASPSIAPSLTVPAQPLAQPLAPALSPPPSGPLSILLVDDDPTVRD
MVAGLLRGWGHRVIAATNANEALVVLDGPEKLDLLLSDVVMPPGMDGTELARHTARMRPG
LPVLLASGFAAHAVGTPAGFGPNVAMIAKPFSIEDLRRQLARIAGRRVGAAPQAQAMAAQ
AIAAPPPAQPPAPPTPRPAGPPRLLIAEDLSINRELLAALFKDSGYRIDLVADGAAAVEA
VKAGDYDLVLMDVQMPEMDGLEASRIIRAMPPPRGDLPILALTAGSSDEERRDCRDAGMN
GHIGKPYERDLLLRQIARTLAAGRSRTGAA