Protein Info for MPMX19_05791 in Azospirillum sp. SherDot2

Annotation: HTH-type transcriptional repressor RspR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00392: GntR" amino acids 38 to 99 (62 residues), 64.8 bits, see alignment E=4.6e-22 PF07729: FCD" amino acids 109 to 232 (124 residues), 100.9 bits, see alignment E=6.9e-33

Best Hits

Swiss-Prot: 34% identical to YIN1_STRAM: Uncharacterized HTH-type transcriptional regulator in unstable DNA locus from Streptomyces ambofaciens

KEGG orthology group: None (inferred from 88% identity to azl:AZL_d01380)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>MPMX19_05791 HTH-type transcriptional repressor RspR (Azospirillum sp. SherDot2)
MKKVATTEDEGGLTSAAVRRSAVPAPAVRPPRRAATVASRIYRDLRGEIVSLKRKPGDAI
AEKQIAETYGVSRTPVREAVLKLADEGLIEIFPQSGTFVSRIPLDALPEAFAIRKALEEA
TVRYAAARASRSQIAALRANLELQREMQETANYEGFHQADEAFHALIAEIAGYPGFWTLI
QQTKVQIDRYRLLTLPVRGRIAEVIAEHTAILDAMAANDPAAAIKALDDHLDDLQISVAD
IRRDYPRYFTAPGDPI