Protein Info for MPMX19_05786 in Azospirillum sp. SherDot2

Annotation: HTH-type transcriptional repressor RspR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF00392: GntR" amino acids 41 to 100 (60 residues), 67.6 bits, see alignment E=5.9e-23 PF07729: FCD" amino acids 111 to 233 (123 residues), 104.9 bits, see alignment E=4e-34

Best Hits

Swiss-Prot: 36% identical to YDFH_ECOL6: Uncharacterized HTH-type transcriptional regulator YdfH (ydfH) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 91% identity to azl:AZL_d01470)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>MPMX19_05786 HTH-type transcriptional repressor RspR (Azospirillum sp. SherDot2)
MDSNAGDTNMVAVAAPVRRRRRRPASATARPAHRGATVSGTIYRDLRDDIVSLRRKPGEP
VIEKEVAETYGVSRTPVREAMLKLADEGLVEVFPQSGTFVARIPISGLPEAIAIRRALEE
ATVRYAAEQASGSQVARLRANLELQREMKESGNFDGFHEADEAFHALLAEISGYPGFWAV
TQQVKRQVDRYRHLTLPAAGRMDKALAEHGAIVEAVAARDPDRAVGELRHHLTDLQLGIA
EVRRSYPQYFTE