Protein Info for MPMX19_05716 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 74 to 96 (23 residues), see Phobius details amino acids 135 to 152 (18 residues), see Phobius details amino acids 175 to 206 (32 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 254 to 276 (23 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 56 to 316 (261 residues), 111 bits, see alignment E=4.5e-36 PF03631: Virul_fac_BrkB" amino acids 64 to 319 (256 residues), 234 bits, see alignment E=1.2e-73

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 87% identity to azl:AZL_d02080)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>MPMX19_05716 hypothetical protein (Azospirillum sp. SherDot2)
MLGLSRRHYYEHRNRVNRLHGGGHGANDGANDGDSRGRSADSPSEIPKKGWKDILLRVWD
EQSKDNVSMLAAGVAYYGLLAIFPAIAALVSIYGLVADPSMIEGQLNQLGSLLPPDALSI
VSDQARKVATAPSQGLGFGLIFGLLLTLWSASRGTNSLVSALNIAYGEKETRGFLMLAAL
SMGLTVAGLLFVILAMALIVAVPAAIAIVGLQDTPIGWIASLARWPILAVTIMLALAVFY
RYAPDRREPQWRWVTWGSAMATVVWLLGSLGFSVYVSNFGSYNETYGSVGAVVVLLLWFN
LTSYVVLLGAELNAEIEHQTARDTTDRDGRPARPLGQRDAYVADTVGERKAS