Protein Info for MPMX19_05620 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 transmembrane" amino acids 36 to 53 (18 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details PF01061: ABC2_membrane" amino acids 35 to 234 (200 residues), 31.2 bits, see alignment E=8e-12

Best Hits

KEGG orthology group: None (inferred from 93% identity to azl:AZL_d02600)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>MPMX19_05620 hypothetical protein (Azospirillum sp. SherDot2)
MQPNELAIPRADFSLRRVGAMVLRYWYLLRGSWPRILELAYWPTMQMILWGYINQFMASS
SGGGSGWVAQGAGVLVSAVLLWDVLFRGQLGVSISFLEEMWSRNLGHLFVSPLRPGEWVT
ALMTMSLLRTLIGVLPAAALAIPFFGYSVFALGLPLAAFFANLIVLGWSLGLLIVALILR
YGMGAEGLAWIVVFMLAPVSAVYYPVSVLPAWLQPVALALPSAHVFEGMRALVFDGTLRW
DHLAWAVGLNMVYMAGGIAVFLYAFHQARVRGALLQTGE