Protein Info for MPMX19_05539 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 289 to 311 (23 residues), see Phobius details PF02743: dCache_1" amino acids 38 to 268 (231 residues), 56.9 bits, see alignment E=4.6e-19 PF00512: HisKA" amino acids 381 to 446 (66 residues), 77.6 bits, see alignment E=1.2e-25 PF02518: HATPase_c" amino acids 493 to 605 (113 residues), 106 bits, see alignment E=3e-34 PF00072: Response_reg" amino acids 632 to 744 (113 residues), 90.5 bits, see alignment E=1.6e-29

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_d03650)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (783 amino acids)

>MPMX19_05539 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPAGPMHRLLRAFSPRSLRARLMGVVLASLALPLGGTLYLADQQLDDHIDAARELAQHLA
DDGVERQHDLIGEARNLLGVLSLVPAIRNATMDHTDACVATLAPMPRQHRWTTGVWLTDA
DGNIICDTTGPGAGITLREREYFQRVLDTKSWVVSDFIIGKRSLKPLIIVASPIIEDGRI
IRVMGVAVDLTWLTDLVKVLKQPDARVMVLDRHGVIVARQPDPEGWLNRNIGNMPHIRQM
LREKDGTLDAESADGRGRLWAFRHSDETDTVFAVGMPTGPIMAEARRDLWQSLGLLAIAA
LVSVTALWVLLRASVLRWVWELGTAATRIGDGGGGTVIEADRAPHEFRVVSHAFNNMSRR
LKQREQELRSAMEEARAGSRAKEEFLATMSHEIRTPMNGVIGFAEMLLETPLTAEQRRYA
SQVRDAGRSLLTVINDVLDLSKLEAGRLDLVSVPFRLDDLADRCVAIVRLAAEQKGLELQ
TSISATARGFVMGDPDRLRQLLLNLLSNAVKFTDRGSVRLTVKAIEDSGKSGGRICTFTV
TDSGIGIAPERQRDLFQRFTQLERGRGGTGLGLAICRRLVELMGGEIGMESQLGTGSTFW
FSLPLLPAGSAAIQPDNAILSPVESGGAGARILLAEDLAMNRDLAVTMLTRAGHRVDAVD
DGAAAVAAVQEQPYDLVLMDVQMPVMDGLEATRRIRALPGPVSRIPILALTAGVMQIEVE
RCLQAGMNAHLAKPLEKSKLLAAIGRWARVAHLDDPLPDDPLPGEGEDEAGNDAPRPQLI
AHR