Protein Info for MPMX19_05462 in Azospirillum sp. SherDot2

Annotation: ATP-dependent RecD-like DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1741 PF08378: NERD" amino acids 21 to 113 (93 residues), 40.4 bits, see alignment 1.3e-13 PF13086: AAA_11" amino acids 1080 to 1464 (385 residues), 131.3 bits, see alignment E=2e-41 PF13245: AAA_19" amino acids 1096 to 1200 (105 residues), 25.9 bits, see alignment 3.5e-09 PF13087: AAA_12" amino acids 1486 to 1708 (223 residues), 130.3 bits, see alignment E=2.5e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1741 amino acids)

>MPMX19_05462 ATP-dependent RecD-like DNA helicase (Azospirillum sp. SherDot2)
MLITPLKAEGIHHREVAGIGTLSKLLPPHWYGYANLEAATPDITPKEIDVVIVLDDRIVI
ADIKEWGGQVASDGQKWYQNNKDMGASPVHKINNNARVLSSMINRHLTHMRVKDAVPRID
SCVIMVGAVDFRKIHERERRFVFGIDDFCKMIVDVEKRNRALTNRGVTKPEQALTRKGGP
WKARFDQIFCSGNYFKPRNRIFDAYRVVSDVIYRHGEIYAEYDAQETEAADTSGLLRYWD
FSKCDPKFYSAEGRAGIIGRERTVLNHLLERSQDMEYALLRQKVTDPEKGLRYWEIFERR
RQTQRLSRFLSGEGRTMAKNVRIDLVRTMLANAARMHALDVSHCDIGDHSVWVELPSTVR
FSHLFAARIPEGRTIAEDRYSLLAKPVSYPETQAGQVSSPFAKDVFLLGCVAHRLLLGRE
PDAVQGASAIWDPAADPNGSFASLHPWLEQALEPEVRKRFPNAQAMLDAFNVATKPLQAD
AETLERLHRFRTHADLIEFMETYPSLKTISSSERGRLYRSVEDGDQLAVKLWNRVNWLEE
RTDGSRLLAFCQRARDLADLALDGICPIREVSYLLDRVAVVMDWVEGPSLQDLLTAPKDT
GPLQGTPAIVDFLLRLIGIVDSLHAQDLAHGDLSPANILCPPRDAAADPGGTSDGGGAVA
VTPVLIDVVDLPGPGEGERYTLEYAPREPATAFQRDRCGVLVIAEKLLERCELEPESLAP
LAQAFGTCREKEPVFATLAPLADALSALRRPRGNGGLVLTIAIPEDVSDDFLLRPDAGEY
HIGVRRQVGERMVTVTGANARLAIHLTREGRPWRVSALALSQDEVGLAQRHRCCGVAATI
LFQRGMFTDPESVRPLLDLPGVAAELQSRQGGQTAEPVADEETGIEGGLDTDFNLDEEAE
AAATGRPPAGSSAVDVAGLWRTLMDVELEDVVEALIDHEVDFSISRKLILIRCRMLHGAL
EFDADDRVSVKTPNRHGDWVHVGVLDVGATRGNLAAIDSPRYRSFDGSNLFALGNRLRFE
SRKSIESRNRRERAITRILGGDAAIKNLVDHFTHRDSVWPISVKGAAVPDGKYLEGRYRL
NESQVQAFQILWTTGPLGLLQGPPGTGKTTFIAAIIHHALTVGGARRILLASQAHEAVDN
AAKGVIDLFAEAGETISLVRVGYKNDLSDTVRPYHKDSLEQRYRDEFRARLKEKIMVVGE
RLGLRTSYLESFHHLVTAVRPVLKKLGALASEQKHGPRPENDRNRRRSGEQAELEDTVFR
LLANIGLSAYEIAAVGYLAVPQVFINNDENAGLEGASQDATGQDAATADDAADSEWVAEA
LNDDDFPDAEDELQSDIPVRKKQVLDFGEPSTFEILAEALARKQQMPIMPDQLRRLVSAV
DLMDDWIGHVGSRHRNFEEFLVGTRQIVCGTCVGLGSLSLGLKSNFDLVIIDEAARCTAG
ELAVPMQSGKRVILVGDHMQLPPFHVGEYVAETAKRIGIPREEVRRSDFERTFTSPYGKA
VGQTLRIQYRMIEPIGRLVSEVFYRDSPLKHGRAAPKVQEGTWPGNLSKAVVWIDTAKAG
ARAFDTEAKHSKSRQNTAEERAVMRLLRDLDRHEPFQAWLQTNRAADKPLEYPIGIICTY
TAQVNLIKKSLLSARISPALRESIRVDTVDSYQGKENLMVILSLVRNNEDGPQGDAGKTI
KQGFLSQPHRINVALSRAMDRLVIVGTSKGWPAGSPMAAVASKVRGLQAEGLAAFHDAEE
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