Protein Info for MPMX19_05432 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 20 to 24 (5 residues), see Phobius details amino acids 33 to 40 (8 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details PF09335: SNARE_assoc" amino acids 51 to 175 (125 residues), 73.6 bits, see alignment E=9.9e-25

Best Hits

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>MPMX19_05432 hypothetical protein (Azospirillum sp. SherDot2)
MLTGLPDFTALDFAAYGTAFAGFIETHADWAEIIIFLMAFAEGLTLVGLLIPGVVMLTAS
GALVAAGVLDFWSVYLAIAGGAILGDATSYWLGRRYGERMFRLWPLSRHPELRGRGEAFF
LRHGSKSVFLARFIGPLRAVVPTTAGMMAMPHRKFQAFNVLSAVIWAPLLMSPGHLAWTG
YDRSGVGDRPAPAAEGGIGQGAARSCAPAPPVEGSPERTGC