Protein Info for MPMX19_05429 in Azospirillum sp. SherDot2

Annotation: Riboflavin transporter RibZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 26 to 49 (24 residues), see Phobius details amino acids 62 to 80 (19 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 372 to 390 (19 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details PF05977: MFS_3" amino acids 29 to 185 (157 residues), 41.2 bits, see alignment E=2e-14 PF07690: MFS_1" amino acids 29 to 424 (396 residues), 189.6 bits, see alignment E=1.9e-59 PF00083: Sugar_tr" amino acids 62 to 195 (134 residues), 38 bits, see alignment E=2.5e-13 PF12832: MFS_1_like" amino acids 67 to 182 (116 residues), 26.9 bits, see alignment E=6.4e-10 PF03137: OATP" amino acids 109 to 173 (65 residues), 26.3 bits, see alignment E=5.7e-10

Best Hits

KEGG orthology group: None (inferred from 78% identity to azl:AZL_d04710)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (477 amino acids)

>MPMX19_05429 Riboflavin transporter RibZ (Azospirillum sp. SherDot2)
MREAVAEQAAAAAGGPARGLVAQGGLAGLALAMLLSSLGTSIANVGLPALALAFDVPFRE
VQWVVLAYLLAITTLIVGVGRLGDIVGRRRLLLAGIALFTAGSAASAAASSLWMLVAARA
VQGLGAAAMMALATAFVGDAVPKERIGRAMGLMGTTSAVGTALGPTLGGLLIAAFGWPAI
FLVTVPPGVAAFLLVRRCLPADRRVETAGGAGRGSFDGPGTLILALTLGTYALAMTGGRG
GFGWSDLTLLLAAAGGAGLFLAVESRTASPLLRLEMLRDRTLRGRLTMSMLVATVLMATL
VVGPFHLARALGLGAAAVGMVMSAGPLVAALTGVPAGRLVDRFGAAGMTVVGLGAVAGGC
VLLALLPATLGVAGYVGPLVVVTAGYALFQTANNTAVMADVEKDRRGVVSGVLNLSRNLG
LITGASVMGTLFTLGVGTEVAVAAPEAVAAGTQTTFAVAAGLIAVALLLAVRTAGRR