Protein Info for MPMX19_05411 in Azospirillum sp. SherDot2

Annotation: Periplasmic alpha-galactoside-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 619 PF00496: SBP_bac_5" amino acids 70 to 489 (420 residues), 169.7 bits, see alignment E=5.2e-54

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 92% identity to azl:AZL_d04910)

Predicted SEED Role

"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (619 amino acids)

>MPMX19_05411 Periplasmic alpha-galactoside-binding protein (Azospirillum sp. SherDot2)
MLRDQVRYGLIPPVRQRMPDEPLIVDVEGKGRDLGLSGGWIRTFITQRRNSRIAVLYGYA
RLVGYTAKREIVPDILKDVQVVDGRDFTLTLRAGHRWSDGAPFTSDDIRYWWEDIANNPM
LSPSGPPRFMLVDGKPPEVSFPDAVTARFHWDEPNPYFLPTLAAARPPFIYRPAHYLKRY
HARYTSEAELAPLLARYKVRNWAALHNALDDMFRMENPDQPTLQPWMAVSKGTGNHLLFQ
RNPYYHRFDRRGVQLPYADGLDVTVMGGGLIPAQVATGKADLQAEGLTFSQVPVLVSGEK
QADYRTLLWPEGKAAEIALYPNLNYNDPVWRTLLRDVRFRRALSMAIDRRIVNRSLFFGL
AQESGVDVLPGSPLFKPERKGVWTGYDPKQASALLDEIGLKRKRGELYRELPDGRPLEVI
VETSGEKPEISDAMQIIAETWRDIGVRLLMRTVDRDVLRNRVYAGQTMMAVWGGWDNGIP
DPDSSPEELAPMTQENFSWPKWGQYYQTSGSAGEPIDMPIPQELMDIARRWRHTTDETER
RALWSALLDIHADQIFAIGVVSKTPQPIAVSNRLRNIPDKGLWLWDPGAYLGVYRPDEFY
FTDARPADPEPVGIHRGED