Protein Info for MPMX19_05344 in Azospirillum sp. SherDot2

Annotation: HTH-type transcriptional regulator YofA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF00126: HTH_1" amino acids 20 to 79 (60 residues), 77.7 bits, see alignment E=5.1e-26 PF03466: LysR_substrate" amino acids 104 to 295 (192 residues), 110.1 bits, see alignment E=1e-35

Best Hits

Swiss-Prot: 39% identical to DGDR_BURCE: HTH-type transcriptional regulator DgdR (dgdR) from Burkholderia cepacia

KEGG orthology group: None (inferred from 66% identity to mdi:METDI0253)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>MPMX19_05344 HTH-type transcriptional regulator YofA (Azospirillum sp. SherDot2)
MPSPPAPPPAMPAPLPPFDLDLLRSFVTIVDSGGFTRAAERLGRTQSTISLQIKRLEDGL
GKRLFLREGRGLDLTPDGEVLLTYARRLLGMAGEACALLMEPEVGGVVRLGTPEDFATAH
LPDVLWRFSRAHPQVALEVQCDFTVNLLDRFARGEYDLVLCKREPQGPAGGVRVWREPLF
WVASDRLILDAGAPVPLVLAPAPDIHRRRAIDALDAHGRPWRMAYTSPSLAGIKAAVTAG
LGVTILPKDMLAPGFHIVNAEHGLPDLPDIETALYRQPGPLPKAVDLLAEHIVRSLERTA
DRTVAG