Protein Info for MPMX19_05343 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 126 to 161 (36 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 208 to 232 (25 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details amino acids 305 to 328 (24 residues), see Phobius details PF05982: Sbt_1" amino acids 9 to 328 (320 residues), 315.7 bits, see alignment E=1.8e-98

Best Hits

Predicted SEED Role

"putative sodium-dependent bicarbonate transporter" in subsystem CO2 uptake, carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>MPMX19_05343 hypothetical protein (Azospirillum sp. SherDot2)
MDTLLSAPILFFGLGAAIALTRARIPFPDGFGKALAAYLLVAIGLKGGVALAGADVGAVL
PLLLTAGLLSLLMPVLGFGLLRSAVGLDQVNAAAIAAHYGSVSLVTFVTATRLLESQGVT
VGGHMVAALAIMEGPAIVSGLLLAGAAGMMSGVAAGGGGSLSVPLGGTGNGGSIKGAIRE
AAFNGSVLLLAGSLLVGLVIGKPGLQSLHGLFIAPWDGVLCLFLLEMGYLATSRLREAVS
LSPRLIAFGIVMPLAGAVIGLAAAASLGLGLGDAALLVTLCASASYIAVPAALRHALPAA
EPGLSLPLSLGITFPFNILVGIPLYLAVSRAVLT