Protein Info for MPMX19_05234 in Azospirillum sp. SherDot2

Annotation: Glycine betaine/choline transport system permease protein OusW

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 56 to 75 (20 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 148 to 175 (28 residues), see Phobius details amino acids 228 to 250 (23 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 119 to 281 (163 residues), 108.3 bits, see alignment E=2.1e-35

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_c02460)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>MPMX19_05234 Glycine betaine/choline transport system permease protein OusW (Azospirillum sp. SherDot2)
MADIALLDIEWLNETIGGGIARGAEWLVTTILDHGQPVLTVIAATVDGLGEALDGLLLGV
PPWWLALVLSAVALWRVGRAFALFTLLSLGGIFVMGLWEPTVSTLGLVLASTVLSLIGGV
PLGIWMARSKIADGVGKTLLDLMQTMPAFVYLIPAVLFFGLGRVPGIIATVVFAMPPAVR
LTALGIRQVPVELVEAGRAFGCRDHQLLFKIQLPNALPSIMAGVNQTMMMALSMIVVASM
IGAGGLGNVVLQGIQRLDIGLGVQSGLAVVLLAVVLDRITQSFGRVGGRGAGRRRAAAGT
AGRRWWRR