Protein Info for MPMX19_05181 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 64 to 80 (17 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 96 to 265 (170 residues), 112 bits, see alignment E=1.4e-36

Best Hits

Swiss-Prot: 54% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 93% identity to azl:AZL_b02570)

MetaCyc: 54% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>MPMX19_05181 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MTAATATQRTETRSRRWTRPAGTLPAGLRRCAVPLALLVLWQASVGLGWISTRTIPSPSQ
ILTAFWDLTVSGELAVHLLVSLGRVSAGLAIGVSAGTVCALIAGLSRRGEDALDALLQML
RTLPHLALVPLFILWFGIGETPKIALVALGTAFPIYLNLFVGIRTVDAKVVEAVSTLGLT
RWEMIARVILPGALPAFLTGLRYALGVAWLSLVVGEQINASSGIGYLAMTAREFLRTDVI
IVALIVYAILGLLADLIVRVIERRALVWRPAFIKE