Protein Info for MPMX19_05050 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter ATP-binding protein YddA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 598 transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 35 to 308 (274 residues), 207.9 bits, see alignment E=3e-65 PF05992: SbmA_BacA" amino acids 39 to 358 (320 residues), 125.5 bits, see alignment E=4.8e-40 PF00005: ABC_tran" amino acids 400 to 542 (143 residues), 83.3 bits, see alignment E=4.1e-27

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 87% identity to azl:AZL_c00850)

Predicted SEED Role

"ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27)" (EC 3.6.3.27)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.27

Use Curated BLAST to search for 3.6.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (598 amino acids)

>MPMX19_05050 Inner membrane ABC transporter ATP-binding protein YddA (Azospirillum sp. SherDot2)
MPARAYSPPSSSGRLSAARQFLSDVWRLTKPYWSSEEKWAARGLLAAIVVLNLAAVFMEV
WFTQINADIFNALQEKDENGFIQALLVFGGLALVFIAVAVYRLYLNQMLQIRWRRWLTER
YLGDWLENQTYYRLQFTNTGTDNPDQRIAEDLRSFVQLTLSLSLGFMTNLVSLVSFLAIL
WSLSGSVTIPWLGIDLPGYMVWVALVYAVGGTWITHKIGKPLARLSFDQQRYEADFRFSL
VRLRENAESVALQQGEVQEARGFGDRFARVVANWWSLMRTQKRLVWFTSAYGQIAIIFPL
LVAAPRYFSGALPLGSLMQTSQAFGQVQGAMSWFIDAYVNLADWHATTSRLTGFHHAVAT
VRAGARDHAGVERTAAADGALTLDGLALTLPDGGSPLVRADLTVQPGESLLITGPSGSGK
STLLRAIAGIWPFGRGRIALPGGVMAAGSATSANGSMVLPQKPYLPIGSLRAAVTYPATP
DAFPDEAVREVLDAVGMAGFAERLAEEDHWSQRLSGGEQQRIAIARALLHKPDWLYLDEA
TSACDPETEERLYGLLRARLPGTTLVSIGHRPSLAAFHDRRMTVRRNGDGVGELAAVS