Protein Info for MPMX19_05023 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details PF01914: MarC" amino acids 2 to 203 (202 residues), 181.6 bits, see alignment E=6.3e-58 TIGR00427: membrane protein, MarC family" amino acids 3 to 201 (199 residues), 157.9 bits, see alignment E=1.3e-50

Best Hits

KEGG orthology group: K05595, multiple antibiotic resistance protein (inferred from 99% identity to azl:AZL_c04720)

Predicted SEED Role

"Membrane protein, MarC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>MPMX19_05023 hypothetical protein (Azospirillum sp. SherDot2)
MSDYISNLVVFFVVVDPPGLVPLFIALTRGFDDRHKRIIALRGTAIAFVVLVFFAYFGKV
VLQTLSIEMPAFRIAGGALLFWIAFEMLFAKRSERKERDTGEAMTDEDAHDIAVFPLAVP
LIAGPGAITSILLLMDRVGTTAAGQVSVLGAAATVIGGVTLILLGADRVGRLLGRTVIHT
VSRVLGIVLAALAAQTVISGITAVYPPH