Protein Info for MPMX19_04988 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 73 to 95 (23 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 274 to 291 (18 residues), see Phobius details PF00892: EamA" amino acids 19 to 145 (127 residues), 58.5 bits, see alignment E=4.5e-20 amino acids 157 to 291 (135 residues), 42.7 bits, see alignment E=3.6e-15

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_c05040)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>MPMX19_04988 hypothetical protein (Azospirillum sp. SherDot2)
MGGTATGGQTWLRLMPGLFVLLWSTGFIGAKYGLPYVEPLTFLLIRLGLVAVVLALVALA
SRAPWPKDWATAGRIALAGLLVHGVYLSGVFLAIAHGLPAGVTALIVGIQPLLTAALSGP
LLGERVSGRQWVGLLLGLAGVGLVVREKLSVDAEHLIGIGYAMAALVGITLGTLYQKRHG
GGMDLRSGTAIQYAATAVVLAVVAPLTETMQVQWTGEFIFALLWLCFVLSVGAIFLLFAL
IRRGAAAKVASLFYLTPPVTALVAWMLFGEKLGVAALAGMAVAVCGVALVNRK